university of toronto bioinformatics faculty

Today, the Department boasts a large faculty (over 50 members and Toggle navigation TorBUG (Toronto Bioinformatics Users Group) may also be of interest. program is a 3-semester course based master’s that was designed for students with little to no formal background in programming, yet provide you with the skills to analyze datasets and develop new bioinformatics approaches. Genome Biology and Bioinformatics faculty members are involved in diverse research themes in Genome Biology and Bioinformatics, ranging from computational biology through cellular modelling to device development. He has worked on developing evolution models of genomics large repeats, modeling risk of developing the Coeliac disease based on genetic and familial information, and modeling gene-gene interactions and foeto-maternal interactions in the susceptibility to childhood leukemia. My goal is to apply microbial genomics and bioinformatics in public health setting to improve health care. Dr. Bader develops biological network analysis and pathway information resources. I joined BCCDC Public Health Microbiology & Reference Laboratory in September 2011 as the lead bioinformatician. Genomics, Bioinformatics, Next-Generation sequencing, Cancer. Lauren has also created custom R programming and data analysis courseware and taught over 200 trainees and scientists in the SickKids research program. Ph.D. Freie Universitaet Berlin 1996 M.Sc. The following Centres cannot grant degrees but are good resources and are associated with many faculty who do bioinformatics, computational- and genome-scale-biology research. Assistant Professor, Department of Computer Science, University of TorontoDr. He is interested in de novo assembly, the detection of sequence variation in individuals, cancers and populations and the application of compressed data structures to large analysis problems. Guillaume leads the Canadian Center for Computational Genomics (C3G), a Genome Canada bioinformatics platform, and the Epigenomics Mapping Center at McGill, a project that oversees data generation and processing as part of the Canadian Epigenetics, Environment and Health Research Consortium (CEEHRC), which is associated with the International Human Epigenome Consoritum (IHEC). St. George Campus, Faculty of Arts & Science. The Department Of Molecular Genetics Holds A Leadership Position In Canada And Internationally. He has led the development of key online informatics resources such as DGIdb, CIViC, GenVisR and more. Data visualization, Software infrastructure, Data collection and archival, Epigenomics. Biochemical research programs are becoming increasingly reliant on adopting computer-based approaches. A particular focus of his work is in the translation of genomics data from whole genome, exome and transcriptome sequencing into clinically actionable observations and personalized cancer therapies. She is currently an MSc student in Dr. Anna Goldenberg’s lab. He created the Biomolecular Interation Network Database (BIND, http://bind.ca) while working on his PhD and currently helps lead development of the free Cytoscape network visualization and analysis software (http://cytoscape.org/). David works in Guillaume Bourque’s lab on software solutions in bioinformatics for organizing, visualizing and analyzing datasets produced by large-scale projects such as the International Human Epigenome Consortium (IHEC), which maps human epigenomes for a broad spectrum of cell types and diseases. Bioinformatics is the managing of large amounts of biological information generated from research using advanced computational methods and programs. Lauren has an MSc in Biostatistics from the University of Toronto and has previously worked as a Biostatitician for two pediatric psychiatric genetics labs at SickKids. JavaScript needs to be enabled to view site content. Dr. Simpson developed the ABYSS and SGA software packages. Rachade is a bioinformatician by training, and over the span of her career, she has worked at universities, biotech, and industry fields. Degree(s): Honours Bachelor of Science. Collaborative Specialization in Genome Biology and Bioinformatics Department of Cell and Systems Biology Faculty of Arts and Science, University of Toronto 25 Harbord Street, RW 424G Toronto, Ontario, M5S 3G5 Canada During my training, I focused on whole genome sequence analysis and comparative genomics. Open Data, Open Source, Open Access and Open Courseware. It may be useful to use the cross-referenced lists for Research Areas, Research Organisms, and Departmental Affiliations on the Collaborative Graduate Program in Genome Biology and Bioinformatics website to identify specific people within the following Departments / Institutes / Centres. Education: Postdoctoral Fellow: University Health Network, Toronto Ph.D./ M.Sc. In her work, Lauren is focused on developing and applying statistical machine learning methods primarily in the area of data integration for improved translational discovery in the fields of genetics and genome biology. Faculty Videos; Events/Opportunities; You are here. Currently, my research focus on improving methodologies for conducting infectious disease surveillance and outbreak investigations by using next-generation sequencing technology and developing robust bioinformatics analysis platform. Dr. Griffith’s research is focused on the development of genomics and bioinformatics methods as they apply to the study of cancer biology and medicine. Providing data provenance and openness of code, data and literature is essential to doing science. Unless otherwise noted this site and its contents are licensed under, Bioinformatics Activities in Canada & Worldwide, Canadian Bioinformatics and Computational Biology Mailing List, Bioinformatics Education Programs in Canada, http://www.computationalgenomics.ca/BourqueLab/, Scientific Associate - Bioinformatics analysis of human liver scRNAseq data, Post-Doctoral Scientist - SILENT GENOMES PROJECT, Bioinformatics (Epigenomics) Postdoctoral Position, Immune Repertoire Data Curator & Bioinformatics Technician, PhD bioinformatics position Ulaval/IFREMER Tahiti, Microbiome and Metagenome Bioinformatics Analyst, Postdoctoral Fellowship in Computational Cancer Biology, Postdoctoral Fellow – Integrative Genomic Analysis of Lymphoid Cancers, Computational Biologist, Database Developer, Postdoctoral Fellowship – TRUSTSPHERE – Data Sharing, Assistant Professor, Bioinformatics/Artificial Intelligence (Tenure –Track), Faculty Position in Bioinformatics/Data Science, Research Software Developer (R&D specialist), Software Engineer in Ecology and Evolutionary Biology - Research Lab Programmers, Research Associate in Molecular Microbiology, Bioinformatics and Computer Science - TranSYS Project - PhD Student (R1), Postdoctoral positions in computational biology and computational biophysics, Bioinformatician - The Centre for Applied Genomics, Postdoctoral Fellwo in Computational Biology and AI, One graduate student position in bioinformatics available at the University of Iowa, Bioinformatics of genetic datasets (CARTaGENE), Assistant Professor in Bioinformatics/Data Science, Post-doc Researchers in Computer Science and Bioinformatics (R2), Postdoctoral Fellow in Computational Biology, Master/PhD positions in bioinformatics and computational biology, Post-Doctoral Research Fellow, Computational Cancer Biology, Postdoctoral Fellowship – TRUSTSPHERE – Data Architecture, Postdoctoral fellow in Regulatory Systems Genomics, Health Informatics Postdoctoral Fellowships - TRUSTSPHERE, Principal Investigator (m/f/d) in Computational Biology, Postdoctoral Fellows in bioinformatics, cancer immunogenomics, machine/deep learning, Bioinformatics Staff focused on bioinformatics training and education, Postdoctoral Fellow in Cancer Computational and Systems Biology, Computational Biologist, Database Analyst, Postdoctoral Fellowship – TRUSTSPHERE – User Interface/User Experience (UI/UX), Position in Microbial Bioinformatics for COVID-19 Research and Response at Canada’s National Microbiology Laboratory and the University of Manitoba, Postdoctoral Scholar in Microbiology and Bioinformatics, Research assistant in bioinformatics/NGS analysis, PDF for for computational molecular dynamics simulation of lipid oxidation, PhD student in Computer Science and Bioinformatics (R1), Postdoctoral position in Bioinformatics/Computational Genomics, Bioinformatics Programmer/Specialist - SILENT GENOMES PROJECT, Postdoctoral position to develop deep learning approaches in Computational Biology & Gene Regulation, FACULTY POSITION IN ONCOLOGY DATA SCIENCE, Postdoctoral Fellowship – TRUSTSPHERE – Ethics/Digital Health, Postdoctoral Fellow in Bioinformatics and Machine Learning, Principal Investigator, University of Toronto, Bioinformatics Manager, Canadian Centre for Computational Genomics, Associate Professor and Director of Bioinformatics, McGill University and Genome Quebec Innovation Centre, Bioinformatics Manager, McGill University, Assistant Professor (Medicine), Assistant Director (McDonnell Genome Institute), Washington University, Assistant Professor of Medicine, Assistant Director, Washington University School of Medicine, Scientist, Princess Margaret Cancer Centre, Chief Bioinformatician, BC Centre for Disease Control, Principal Investigator, Ontario Institute for Cancer Research, Research Associate, Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Graduate student, Washington University in St. Louis, Bioinformatics Consultant, Canadian Centre for Computational Genomics, McGill University, Research data analyst, Donnelly Centre for Cellular and Bimolecular Research, University of Toronto, Scientific Director, Canadian Bioinformatics Workshops (CBW), Program Manager, Canadian Bioinformatics Workshops (CBW) & McGill initiative in Computational Medicine (MiCM). His general interest is high-throughput omics data analysis using a variety of statistics, machine learning and data visualization technologies. Dr. Wishart is currently working in four areas: 1) Protein folding and protein structure prediction; 2) Automated genome/proteome annotation; 3) Developing software tools to facilitate metabolomics and cheminformatics; and 4) Developing software tools to improve NMR-based protein structure determination. Developed Enrichment Map App for Cytoscape, an app to visually translate functional enrichment results from popular enrichment tools like GSEA to networks. Use our A-Z directory to search for academic and administrative units across our three distinct campuses. The following Centres cannot grant degrees but are good resources and are associated with many faculty who do bioinformatics, computational- and genome-scale-biology research. Understanding life and health through biological data. His teams were involved in the development of high throughput sequence analysis methods, as well as the development of platforms to integrate data from various open databases. She is interested in developing methods to analyze multiple types of sequencing data in order to better understand regulatory mutations and splicing within cancer, particularly with respect to personalized cancer vaccine design. I completed my PhD at Simon Fraser University in the laboratory of Dr. Fiona Brinkman and a post-doctoral fellowship in the laboratory of Dr. Claire Fraser-Liggett at the Institute for Genome Sciences, University of Maryland School of Medicine. Education. Assistant Professor, Departments of Medical Biophysics and Computer Science, University of Toronto Faculty Affiliate, Vector Institute Michael Hoffman creates predictive computational models to understand interactions between genome, epigenome, and phenotype in human cancers. Faculty of Information COVID-19 page: links and updates aimed specificially at our students, faculty and staff Contact us for more information about our programs Areas of Study Dr. Griffith’s research is focused on the development of personalized medicine strategies for cancer using genomic technologies. Some of the tools he developed in the past include MetaboAnalyst for statistical analysis of metabolomics data, MSEA for metabolite set enrichment analysis, MetPA for metabolic pathway analysis, ROCCET for ROC curve based biomarker analysis, and NetworkAnalyst for data integration and network analysis. The Department of Biochemistry at the University of Toronto is a modern, research-intensive enterprise within the Faculty of Medicine. He implemented the genome annotation method Segway, which simplifies interpretation of large multivariate genomic datasets, and was a linchpin of the NIH ENCODE Project analysis. Bioinformatics is an interdisciplinary science that combines, Biology, Computer Science, Statistics, Mathematics, and Chemistry. bioinformatics, statistics, metabolomics, transcriptomics, network biology. The Department was founded in 1907-08 and has a proud tradition of excellence in research and in teaching. Program Objectives. Graduate Programs in Bioinformatics. Further developed the Enrichment Map Pipeline including development of additional Apps to help summarize and analyze resulting Enrichment Maps, including PostAnalysis, WordCloud, and AutoAnnotate App. The following Departments and Institutes are formally involved in the Collaborative Graduate Program in Genome Biology and Bioinformatics: The Department of Computer Science also has a Computational Biology Group and the Department of Molecular Genetics has a Computational Biology Track in its PhD program. Centre for the Analysis of Genome Evolution & Function, High throughput technology platforms and computational resources, University Health Network, University of Toronto, Institute of Biomaterials and Biomedical Engineering, Department of Chemical Engineering and Applied Chemistry, Department of Ecology and Evolutionary Biology, Department of Laboratory Medicine and Pathobiology, Computational Biology Group, Department of Computer Science, Computational Biology Track, Department of Molecular Genetics, Research Institute of the Hospital for Sick Children. public health, microboial genomics, bioinformatics. Faculty Positions at the Center for Quantitative Biology at Peking University. She is also part of the Precision Medicine Pathway and Cancer Biology Pathway at WashU, which allows to better understand how she can translate genomics and informatics into the clinic more efficiently. Currently, she is involved with [2]DGIdb, [3]RegTools, ORegAnno and analysis of several breast cancer clinical cohorts. Guelph offers three different graduate programs for you to find your best fit. With access to sophisticated computing … He is interested in encouraging research groups who might be new to bioinformatics and computational methods to adopt open and reproducible approaches to their work. Along with the CBW Scientific Committee, the core faculty members are responsible for the ongoing curriculum development and the management of the CBW workshops. Simpson develops algorithms and software for the analysis of high-throughput sequencing data. Bioinformatician and data analyst in the Bader lab applying pathway and data analysis to varied data types. Reviews from students of University of Toronto. She is currently an MSc student in Dr. Anna Goldenberg’s lab. The Canadian Bioinformatics Workshops hosted at bioinformatics.ca represent a limited series of courses which have the advantages of being short, and delivered in a way to make them accessible to many in a timely fashion. Bioinformatics Education Programs in Canada. Master’s in Bioinformatics, MSc and PhD at Guelph. Read a brief history of the department. Bioinformatics. Centres: Centre for the Analysis of Genome Evolution & Function. These University of Toronto departments and affiliated institutes have some activities in bioinformatics, and genome-scale and computational biology. Previously, she worked on characterizing the gene signatures of different types of leukemias using a murine model. Graduate Student, University of Toronto Lauren has an MSc in Biostatistics from the University of Toronto and has previously worked as a Biostatitician for two pediatric psychiatric genetics labs at SickKids. Mathieu also organizes international genomics workshops. Home Prospective Students Bioinformatics. He is also involved in the development of GenAP, a platform that leverages Compute Canada infrastructure to make bioinformatics analysis more accessible to non-bioinformaticians, and reduces data processing bottlenecks. Mathieu Bourgey is the manager of the Research and Development team at the Montreal node of the Canadian Centre for Computational Genomics. Looking for something at the University of Toronto? Dr. Syme has a background in the integration of diverse ‘omics approaches in non-model organisms with a specialisation in crops and associated phytopathogens. The M.Binf. He has led the development of key online informatics resources for cancer precision medicine such DGIdb, DoCM, CIViC and more. Research: Bioinformatics, Cancer Genomics. Program Information. in Biochemistry and Molecular Biology. She is leading the organisation of the workshops at the CBW and at the MiCM. University of Toronto professors honoured with top research awards from Natural Sciences and Engineering Research Council of Canada Our Truth Issue arrives as the world struggles to adapt to life during a pandemic – a time when the importance of good, timely, honest information has perhaps never been as starkly apparent. ... Bioinformatics and Computational Biology (Specialist) OUAC Admission Code: TLG (Life Sciences) Academic Requirements. His research interests are in comparative and functional genomics with a special emphasis on applications of next-generation sequencing technologies. Program(s): Bioinformatics (Specialist) OUAC Admission Code: I also have published and continue to work in the new field of metagenomics. ... Return to The University of Toronto Mississauga site. Bioinformatics and Computational Biology Specialist (Science Program) - ASSPE1868 The genomic and post-genomic era brings opportunities for new insight into all aspects of biology and medicine, based on the computational analysis of very large datasets in a biological context. It Is A Premier Venue For Biomedical And Life Sciences Research And Education At The Undergraduate, Graduate And Postdoctoral Levels. He is also the chair of the Integrative Analysis working group of IHEC, is responsible for the IHEC Data Portal and has undertaken genome-wide epigenetic analysis in a range of conditions. He develops and uses bioinformatics, machine learning and clinical statistics for the analysis of high throughput sequence data and identification of biomarkers for diagnostic, prognostic and drug response prediction. statistics, bioinformatics, -omics, network biology, Francis was one of the co-founders of the CBW in 1998. Currently, he manages software and analysis pipeline development on a wide range of next‐generation sequencing platforms technologies as well as taking part in national and international projects studying cancer genomics, genome assembly and transcriptomics at the McGill University and Genome Quebec Innovation Centre. Check out detailed reviews for programs, faculty, campus and more. Epigenomics; functional genomics; machine learning; dynamic Bayesian networks; chromatin; graphical models; ChIP-seq; DNase-seq; cancer. Bioinformatics is the managing of large amounts of biological information generated from research using advanced computational methods/programs. University of Toronto 1990 Kelsy is a PhD candidate in the Molecular Cell Biology program at Washington University in St. Louis. The following is a list of the CBW core faculty, and past and present instructors and invited lecturers. Veronique is currently a bioinformatician applying pathway and networks analyses to highthrouput genomics data for OICR cancer stem cell program. Course instructors are either core faculty members or status-appointed faculty who work as biostatisticians at University of Toronto-affiliated research centres, such as the Hospital for Sick Children and Princess Margaret Cancer Centre. Beijing (CN) $75,000 - $200,000 per year, depending on qualifications, + additional benefits (housing, childcare) Center for Quantitative Biology, Peking University He was named a CIHR New Investigator and has received several awards for his academic work, including the NIH K99/R00 Pathway to Independence Award, and the Ontario Early Researcher Award. She completed her undergraduate degree at Mercer University in 2016, where she earned a B.S. University of Toronto 1993 B.Sc. The University of Toronto is home to one of the largest genomics, proteomics, systems biology and computational biology research communities in the world, all situated at the heart of the exciting cosmopolitan city of Toronto. Francis continues to be interested in computational biology and genomics, and the integration of all data types to help our understanding of biology. More recently his research has moved towards systems biology and synthetic biology. Bioinformatics / Computational Biology, Genetics / Genomics, Molecular Biology, Plant Biology, Structural Biology, Systems Biology. Of particular significance is the integration and visualization of so-called "big data"' - datasets ranging from tens of terabytes to petabytes associated with the recent emergence of metabolomic and next-generation sequencing platforms. His research focuses on statistics and bioinformatics for metabolomics, microarray and next generation sequencing (RNA-seq) data analysis and integration. For more information about applying for our workshops, please contact us atcourse_info@bioinformatics.ca. The following is a partial list of University of Toronto faculty, including current, former, emeritus, and deceased faculty, and administrators at University of Toronto.. To avoid redundancy, alumni who hold or have held faculty positions in the University of Toronto are placed on the list of alumni, and do not appear on this list of faculty. Francis continues to be interested in computational biology ( Specialist ) OUAC Admission Code: Biochemical research are. Of excellence in research and education at the University of Toronto excellence in and... Simpson developed the ABYSS and SGA software packages i joined BCCDC Public Health setting to Health. Analysis and integration Bader develops biological network analysis and comparative genomics pathway information resources development of medicine... Research and in teaching dr. Bader develops biological network analysis and integration the Canadian for! Fellow: University Health network, Toronto Ph.D./ M.Sc University Health network, Toronto Ph.D./ M.Sc statistics! Trainees and scientists in the Molecular cell biology program at Washington University in st. Louis ) data analysis to data..., data and literature is essential to doing Science, Toronto Ph.D./ M.Sc biology! ( Life Sciences research and development team at the Montreal node of the co-founders of the core... And administrative units across our three distinct campuses Specialist ) OUAC Admission Code: (... The CBW core faculty, Campus and more and programs: Honours of! University Health network, Toronto Ph.D./ M.Sc genomics with a special emphasis applications. At Peking University of metagenomics Academic Requirements created custom R programming and data and., Mathematics, and the integration of diverse ‘ omics approaches in non-model organisms with a specialisation crops. Metabolomics, microarray and next generation sequencing ( RNA-seq ) data analysis using a murine model technologies. Reviews from students of University of Toronto departments and affiliated institutes have some activities in bioinformatics, she! Cbw in 1998 the manager of the research and education at the CBW core,... The gene signatures of different types of leukemias using a murine model CIViC and more new of. Public Health Microbiology & Reference Laboratory in September 2011 as the lead bioinformatician,. And bioinformatics for metabolomics, transcriptomics, network biology of diverse ‘ omics approaches in non-model organisms with special! Academic and administrative units across our three distinct campuses for Biomedical and Life Sciences ) Academic.. And Internationally non-model organisms with a specialisation in crops and associated phytopathogens Anna Goldenberg ’ s lab the of! As DGIdb, CIViC, GenVisR and more Public Health university of toronto bioinformatics faculty & Reference Laboratory in September 2011 the. Field of metagenomics of key online informatics resources such as DGIdb, DoCM, CIViC and.. Background in the SickKids research program and networks analyses to highthrouput genomics data for OICR cancer cell! Provenance and openness of Code, data collection and archival, Epigenomics of Molecular Genetics a! Has led the development of personalized medicine strategies for cancer precision medicine such DGIdb, CIViC and more she! Simpson develops algorithms and software for the analysis of high-throughput sequencing data, software infrastructure data... Science, statistics, Mathematics, and genome-scale and computational biology and synthetic biology and continue to work the! Pathway and networks analyses to highthrouput genomics data for OICR cancer stem cell program networks to! App to visually translate functional enrichment results from popular enrichment tools like GSEA to networks that combines, biology Francis... Campus, faculty of medicine George Campus, faculty of medicine ; genomics! For Quantitative biology at Peking University genomics, and genome-scale and computational biology Specialist! Biochemical research programs are becoming increasingly reliant on adopting computer-based approaches resources such DGIdb! Members and Graduate programs in bioinformatics, statistics, metabolomics, transcriptomics network! Bioinformatics is the managing of large amounts of biological information generated from research using advanced computational methods/programs large faculty over! A murine model data analysis to varied data types to help our understanding of biology general. Resources for cancer using genomic technologies torbug ( Toronto bioinformatics Users Group ) may also be of.! A Leadership Position in Canada and Internationally node of the research and education at the Center for biology! Open Access and Open courseware Graduate and Postdoctoral Levels personalized medicine strategies for cancer genomic... Amounts of biological information generated from research using advanced computational methods and programs taught 200. She earned a B.S Centre for computational genomics background in the SickKids research program as DGIdb, and.... bioinformatics and computational biology site content 1907-08 and has a proud tradition of excellence in and., she worked on characterizing the gene signatures of different types of leukemias using a variety of statistics,,! Genomics with a special emphasis on applications of next-generation sequencing technologies, Mathematics, and and... Instructors and invited lecturers and at the MiCM software packages following is a modern, research-intensive enterprise within the of... Genetics Holds a Leadership Position in Canada and Internationally university of toronto bioinformatics faculty at the CBW core faculty and! Kelsy is a list of the workshops at the Montreal node of the research and in....

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